MolNFT v1 · #15554 · protein

Solution structure of a liganded type 2 wheat non-specific lipid transfer protein

1N89: “Solution structure of a liganded type 2 wheat non-specific lipid transfer protein”. Solution nmr, 1 ligand (PGM), 1 pocket (best druggability 0.69). MolNFT v1 #15554 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1N89
Type: protein
Length: 67 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipid transfer protein
UniProt: P82900
Ligands: PGM
Pockets: 1 · best druggability 0.69

Structure

solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipid transfer protein	protein	67	57% helix, 0% strand	P82900

Ligands and binding sites

PGM · 1-myristoyl-2-hydroxy-sn-glycero-3-[phospho-rac-(1-glycerol)] · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	163	0.69	0.88	26	PGM

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1N89 · Solution structure of a liganded type 2 wheat non-specific Lipid Transfer Protein · the same entry in another collection · chain A against A, TM-score 1.00
P82900 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein 2G (P82900) · a predicted model of the same protein · chain A against A, TM-score 0.69

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P82900
Elsewhere: RCSB PDB 1N89 · PDBe 1N89 · UniProt P82900

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