MolNFT v1 · #155512 · protein

Xenons in frog EPDR1

6L9X · Ependymin-related 1: “Xenons in frog EPDR1”. X-ray diffraction, 1 ligand (XE), 1 pocket (best druggability 0.67). MolNFT v1 #155512 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6L9X
Type: protein
Length: 185 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ependymin-related 1
UniProt: F6VRB7
Ligands: XE
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ependymin-related 1	protein	185	4% helix, 43% strand	F6VRB7

Ligands and binding sites

XE · Xenon · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	560	0.67	0.77	43	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6L9X · Xenons in frog EPDR1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F6VRB7
Elsewhere: RCSB PDB 6L9X · PDBe 6L9X · UniProt F6VRB7

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