MolNFT v1 · #155433 · protein

Toxin complex TCDA1-TCDB1-TCCC2

6L7E: “Toxin complex TCDA1-TCDB1-TCCC2”. Electron microscopy, 20 pockets (best druggability 0.87). MolNFT v1 #155433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6L7E
Type: protein
Length: 12,270 residues
Chains: 5
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TCDA1
UniProt: Q9RN43
Pockets: 20 · best druggability 0.87

Structure

electron microscopy · 1 distinct chain · 41% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	TCDA1	protein	2454	41% helix, 18% strand	Q9RN43

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1061	0.87	0.88	115	empty
2	995	0.87	0.88	100	empty
3	743	0.86	0.90	88	empty
4	910	0.86	0.87	112	empty
5	857	0.85	0.88	92	empty

Interfaces

10 interfaces between chains.

A–B · 12223 Å² buried · 112 hydrogen bonds · protein-protein
C–D · 12210 Å² buried · 112 hydrogen bonds · protein-protein
D–E · 12199 Å² buried · 109 hydrogen bonds · protein-protein
B–C · 12197 Å² buried · 109 hydrogen bonds · protein-protein
A–E · 12196 Å² buried · 108 hydrogen bonds · protein-protein

Compared structures

6L7E · Toxin Complex TcdA1-TcdB1-TccC2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RN43
Elsewhere: RCSB PDB 6L7E · PDBe 6L7E · UniProt Q9RN43

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