MolNFT v1 · #155275 · protein

Neutron crystal structure of the mutant green fluorescent protein (egfp)

6L26: “Neutron crystal structure of the mutant green fluorescent protein (egfp)”. Neutron diffraction, 2 ligands (CRO, D3O), 1 pocket (best druggability 0.77). MolNFT v1 #155275 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6L26
Type: protein
Length: 225 residues
Chains: 1
Method: neutron diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Green fluorescent protein
UniProt: W6KDG8
Ligands: CRO, D3O
Pockets: 1 · best druggability 0.77

Structure

neutron diffraction · 1 distinct chain · 11% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Green fluorescent protein	protein	225	11% helix, 51% strand	W6KDG8

Ligands and binding sites

CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
D3O · trideuteriooxidanium · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.77	0.97	26	CRO

Modifications

Observed in the structure: 2 cofactor (chromophore).

Compared structures

6L26 · Neutron crystal structure of the mutant green fluorescent protein (EGFP) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W6KDG8
Elsewhere: RCSB PDB 6L26 · PDBe 6L26 · UniProt W6KDG8

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