MolNFT v1 · #155056 · protein

Crystal structure of udpx-SRUGT76G1

6KVJ · Udp-glycosyltransferase 76G1: “Crystal structure of udpx-SRUGT76G1”. X-ray diffraction, 1 ligand (UDX), 3 pockets (best druggability 0.81). MolNFT v1 #155056 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KVJ
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-glycosyltransferase 76G1
EC: 2.4.1.-
UniProt: Q6VAB4
Ligands: UDX
Pockets: 3 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-glycosyltransferase 76G1 (EC 2.4.1.-)	protein	448	47% helix, 15% strand	Q6VAB4

Ligands and binding sites

UDX · Uridine-5'-diphosphate-xylopyranose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	934	0.81	0.83	80	UDX
2	60	0.40	0.81	14	empty
3	59	0.28	0.74	15	empty

Compared structures

6KVJ · Crystal structure of UDPX-SrUGT76G1 · the same entry in another collection · chain A against A, TM-score 1.00
Q6VAB4 · AlphaFold monomer V2.0 prediction for udp-glycosyltransferase 76G1 (Q6VAB4) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6VAB4
Elsewhere: RCSB PDB 6KVJ · PDBe 6KVJ · UniProt Q6VAB4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.