MolNFT v1 · #155046 · protein
MOEE5 in complex with udp-glucuronic acid and NAD
6KV9: “MOEE5 in complex with udp-glucuronic acid and NAD”. X-ray diffraction, 2 ligands (NAD, UGA), 2 pockets (best druggability 0.84). MolNFT v1 #155046 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KV9
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MOEE5
- UniProt
- A0A003
- Ligands
- NAD, UGA
- Pockets
- 2 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MOEE5 | protein | 299 | 40% helix, 20% strand | A0A003 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
- UGA · Uridine-5'-diphosphate-glucuronic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 541 | 0.84 | 0.90 | 63 | NAD, UGA |
| 2 | 70 | 0.60 | 0.90 | 17 | empty |
Compared structures
- 6KV9 · MoeE5 in complex with UDP-glucuronic acid and NAD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A003
- Elsewhere: RCSB PDB 6KV9 · PDBe 6KV9 · UniProt A0A003
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