MolNFT v1 · #154917 · protein
A pre-assembled molecular-helical cascade backbone of CSY3 subunits from zymomonas mobilis
6KQR · CRISPR-associated protein CSY3 family: “A pre-assembled molecular-helical cascade backbone of CSY3 subunits from zymomonas mobilis”. X-ray diffraction, 20 pockets (best druggability 0.81). MolNFT v1 #154917 on GenesisL1: 3D…
- PDB
- 6KQR
- Type
- protein
- Length
- 2,334 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CRISPR-associated protein CSY3 family
- UniProt
- A0A2R4RXD4
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | CRISPR-associated protein CSY3 family | protein | 333 | 30% helix, 27% strand | A0A2R4RXD4 |
| E, F, G | CRISPR-associated protein CSY3 family | protein | 334 | 30% helix, 28% strand | A0A2R4RXD4 |
Pockets
20 pockets found on a 1 Å grid, 16 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 831 | 0.81 | 0.84 | 109 | empty |
| 2 | 498 | 0.77 | 0.85 | 59 | empty |
| 3 | 507 | 0.76 | 0.84 | 52 | empty |
| 4 | 454 | 0.75 | 0.84 | 48 | empty |
| 5 | 443 | 0.74 | 0.84 | 49 | empty |
Interfaces
11 interfaces between chains.
- F–G · 2086 Ų buried · 31 hydrogen bonds · protein-protein
- E–F · 2080 Ų buried · 28 hydrogen bonds · protein-protein
- D–E · 2051 Ų buried · 35 hydrogen bonds · protein-protein
- C–D · 2004 Ų buried · 36 hydrogen bonds · protein-protein
- A–B · 2002 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 6KQR · A pre-assembled molecular-helical Cascade backbone of Csy3 subunits from Zymomonas mobilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2R4RXD4
- Elsewhere: RCSB PDB 6KQR · PDBe 6KQR · UniProt A0A2R4RXD4
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