MolNFT v1 · #154897 · protein
Crystal structure of cytochrome C551 from pseudomonas sp. strain mt-1.
6KQ1 · Cytochrome C biogenesis protein ccsa: “Crystal structure of cytochrome C551 from pseudomonas sp. strain mt-1.”. X-ray diffraction, 2 ligands (HEC, ZN), 1 pocket (best druggability 0.84). MolNFT v1 #154897 on GenesisL1: 3D structure…
- PDB
- 6KQ1
- Type
- protein
- Length
- 164 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C biogenesis protein ccsa
- UniProt
- A0A2E2GL08
- Ligands
- HEC, ZN
- Pockets
- 1 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C biogenesis protein ccsa | protein | 82 | 51% helix, 2% strand | A0A2E2GL08 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 538 | 0.84 | 0.89 | 67 | HEC |
Interfaces
1 interface between chains.
- A–B · 277 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
- 6KQ1 · Crystal structure of cytochrome c551 from Pseudomonas sp. strain MT-1. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2E2GL08
- Elsewhere: RCSB PDB 6KQ1 · PDBe 6KQ1 · UniProt A0A2E2GL08
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