MolNFT v1 · #154891 · protein
Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N- acetylglucosamine-asn
6KPO · Chitinase: “Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris D154N/E156Q mutant in complex…”. X-ray diffraction, 3 ligands (ASN, NAG, FUC), 2 pockets (best druggability 0.29). MolNFT v1 #154891 on…
- PDB
- 6KPO
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase
- UniProt
- G3JPF7
- Ligands
- ASN, NAG, FUC
- Pockets
- 2 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase | protein | 294 | 39% helix, 16% strand | G3JPF7 |
Ligands and binding sites
- ASN · Asparagine · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.29 | 0.75 | 14 | empty |
| 2 | 59 | 0.28 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6KPO · Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3JPF7
- Elsewhere: RCSB PDB 6KPO · PDBe 6KPO · UniProt G3JPF7
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