MolNFT v1 · #154889 · protein

Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris in complex with L-fucose

6KPM · Chitinase: “Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris in complex with L-fucose”. X-ray diffraction, 1 ligand (FUC), 1 pocket (best druggability 0.32). MolNFT v1 #154889 on GenesisL1: 3D…

PDB: 6KPM
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chitinase
UniProt: G3JPF7
Ligands: FUC
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chitinase	protein	295	40% helix, 17% strand	G3JPF7

Ligands and binding sites

FUC · alpha-L-fucopyranose · sugar · chains A
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.32	0.76	15	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6KPM · Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G3JPF7
Elsewhere: RCSB PDB 6KPM · PDBe 6KPM · UniProt G3JPF7

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