MolNFT v1 · #154888 · protein
Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris in apo form
6KPL · Chitinase: “Crystal structure of endo-beta-N-acetylglucosaminidase from cordyceps militaris in apo form”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #154888 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6KPL
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase
- UniProt
- G3JPF7
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase | protein | 294 | 40% helix, 17% strand | G3JPF7 |
Ligands and binding sites
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.32 | 0.76 | 15 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6KPL · Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3JPF7
- Elsewhere: RCSB PDB 6KPL · PDBe 6KPL · UniProt G3JPF7
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