MolNFT v1 · #154868 · protein

Crystal structure of two domain M1 zinc metallopeptidase E323A mutant bound to L-tryptophan amino acid

6KOY · Zinc metalloprotease: “Crystal structure of two domain M1 zinc metallopeptidase E323A mutant bound to L-tryptophan amino acid”. X-ray diffraction, 2 ligands (TRP, ZN), 6 pockets (best druggability 0.65). MolNFT v1 #154868 on…

PDB: 6KOY
Type: protein
Length: 864 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zinc metalloprotease
UniProt: Q9RVZ5
Ligands: TRP, ZN
Pockets: 6 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Zinc metalloprotease	protein	432	28% helix, 33% strand	Q9RVZ5

Ligands and binding sites

TRP · Tryptophan · ligand · 2 copies · chains A, B
ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	215	0.65	0.83	35	TRP
2	234	0.62	0.81	31	TRP
3	154	0.46	0.76	35	empty
4	109	0.43	0.78	29	empty
5	52	0.42	0.82	13	empty

Interfaces

1 interface between chains.

A–B · 414 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6KOY · Crystal structure of two domain M1 Zinc metallopeptidase E323A mutant bound to… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RVZ5
Elsewhere: RCSB PDB 6KOY · PDBe 6KOY · UniProt Q9RVZ5

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