MolNFT v1 · #15486 · protein

Clumping factor a from staphylococcus aureus

1N67: “Clumping factor a from staphylococcus aureus”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.65). MolNFT v1 #15486 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1N67
Type: protein
Length: 332 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Clumping factor
UniProt: Q53653
Ligands: MG
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Clumping factor	protein	332	5% helix, 48% strand	Q53653

Ligands and binding sites

MG · Magnesium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	319	0.65	0.80	38	MG
2	157	0.46	0.76	34	empty

Compared structures

1N67 · Clumping Factor A from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Q53653 · AlphaFold monomer V2.0 prediction for clumping factor a (Q53653) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53653
Elsewhere: RCSB PDB 1N67 · PDBe 1N67 · UniProt Q53653

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