MolNFT v1 · #154784 · protein
Crystal structure of momordica charantia 7S globulin
6KM8: “Crystal structure of momordica charantia 7S globulin”. X-ray diffraction, 1 ligand (CU), 3 pockets (best druggability 0.79). MolNFT v1 #154784 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KM8
- Type
- protein
- Length
- 345 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 7S globulin
- Ligands
- CU
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 7S globulin | protein | 345 | 10% helix, 41% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.79 | 0.99 | 20 | ACT |
| 2 | 81 | 0.33 | 0.74 | 17 | empty |
| 3 | 55 | 0.30 | 0.75 | 18 | empty |
Compared structures
- 6KM8 · Crystal Structure of Momordica charantia 7S globulin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KM8 · PDBe 6KM8
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