MolNFT v1 · #154742 · protein
Crystal structure of the S65T/F99S/M153T/V163A variant of non- deuterated GFP at pd 8.5
6KL1 · Green fluorescent protein: “Crystal structure of the S65T/F99S/M153T/V163A variant of non- deuterated GFP at pd 8.5”. X-ray diffraction, 1 ligand (CRO), 1 pocket (best druggability 0.78). MolNFT v1 #154742 on GenesisL1: 3D…
- PDB
- 6KL1
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- P42212
- Ligands
- CRO
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 227 | 12% helix, 51% strand | P42212 |
Ligands and binding sites
- CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.78 | 0.98 | 26 | CRO |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 6KL1 · Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 6KL1 · PDBe 6KL1 · UniProt P42212
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