MolNFT v1 · #154658 · protein + DNA

Crystal structure of yedk with ssdna containing an abasic site

6KIJ: “Crystal structure of yedk with ssdna containing an abasic site”. X-ray diffraction, 1 ligand (PED). MolNFT v1 #154658 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KIJ
Type: protein + DNA
Length: 229 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A2S5ZH06
Ligands: PED

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	—	protein	226	—	A0A2S5ZH06
A	—	dna	3	—	—

Ligands and binding sites

PED · Pentane-3,4-diol-5-phosphate · ligand · chains B, A
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2S5ZH06
Elsewhere: RCSB PDB 6KIJ · PDBe 6KIJ · UniProt A0A2S5ZH06

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