MolNFT v1 · #154578 · protein
A acp-amt fusion protein of hybrid POLYKETIDE/NON-ribosomal peptide synthetase
6KFU · Mycosubtilin synthase subunit A,MYCOSUBTILIN synthase…: “A acp-amt fusion protein of hybrid POLYKETIDE/NON-ribosomal peptide synthetase”. X-ray diffraction, 1 ligand (PLP), 5 pockets (best druggability 0.70). MolNFT v1 #154578 on…
- PDB
- 6KFU
- Type
- protein
- Length
- 527 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mycosubtilin synthase subunit A,MYCOSUBTILIN synthase subunit a
- EC
- 2.3.1.-
- UniProt
- Q9R9J1
- Ligands
- PLP
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mycosubtilin synthase subunit A,MYCOSUBTILIN synthase subunit a (EC 2.3.1.-) | protein | 527 | 46% helix, 14% strand | Q9R9J1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.70 | 0.95 | 18 | empty |
| 2 | 440 | 0.61 | 0.76 | 54 | PLP, GOL |
| 3 | 194 | 0.51 | 0.77 | 39 | empty |
| 4 | 159 | 0.46 | 0.76 | 30 | empty |
| 5 | 164 | 0.42 | 0.74 | 31 | empty |
Modifications
Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).
Compared structures
- 6KFU · A ACP-AMT Fusion Protein of Hybrid Polyketide/Non-Ribosomal Peptide Synthetase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9R9J1
- Elsewhere: RCSB PDB 6KFU · PDBe 6KFU · UniProt Q9R9J1
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