MolNFT v1 · #154576 · protein
Structure of ccm related protein
6KFS · LCIB_C_CA domain-containing protein: “Structure of ccm related protein”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.28). MolNFT v1 #154576 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KFS
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LCIB_C_CA domain-containing protein
- UniProt
- A0A173LZ50
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LCIB_C_CA domain-containing protein | protein | 248 | 44% helix, 18% strand | A0A173LZ50 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.28 | 0.74 | 11 | empty |
| 2 | 59 | 0.26 | 0.72 | 19 | empty |
Compared structures
- 6KFS · Structure of CCM related protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A173LZ50
- Elsewhere: RCSB PDB 6KFS · PDBe 6KFS · UniProt A0A173LZ50
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