MolNFT v1 · #154568 · DNA
NMR solution structure of the 1:1 complex of WTTEL26 G-quadruplex and a tripodal cationic fluorescent probe nbte
6KFJ · G-quadruplex DNA WTTEL26: “NMR solution structure of the 1:1 complex of WTTEL26 G-quadruplex and a tripodal cationic fluorescent probe…”. Solution nmr, 1 ligand (D6F), 1 pocket (best druggability 0.33). MolNFT v1 #154568 on…
- PDB
- 6KFJ
- Type
- DNA
- Length
- 26 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- G-quadruplex DNA WTTEL26
- Ligands
- D6F
- Pockets
- 1 · best druggability 0.33
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | G-quadruplex DNA WTTEL26 | dna | 26 | — | — |
Ligands and binding sites
- D6F · 4,4',4''-(nitrilotris(benzene-4,1-diyl))tris(1-ethylpyridin-1-ium) iodide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.33 | 0.74 | 12 | empty |
Compared structures
- 6KFJ · NMR solution structure of the 1:1 complex of wtTel26 G-quadruplex and a tripodal cationic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KFJ · PDBe 6KFJ
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