MolNFT v1 · #154495 · protein
Crystal structure of vibralactone cyclase
6KD0: “Crystal structure of vibralactone cyclase”. X-ray diffraction, 4 pockets (best druggability 0.75). MolNFT v1 #154495 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KD0
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vibralactone cyclase
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vibralactone cyclase | protein | 343 | 44% helix, 18% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 377 | 0.75 | 0.85 | 47 | empty |
| 2 | 126 | 0.45 | 0.77 | 19 | empty |
| 3 | 60 | 0.36 | 0.78 | 15 | empty |
| 4 | 59 | 0.33 | 0.76 | 12 | empty |
Compared structures
- 6KD0 · Crystal Structure of Vibralactone Cyclase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KD0 · PDBe 6KD0
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