MolNFT v1 · #154409 · protein
Crystal structure of plasmodium lysyl-tRNA synthetase in complex with a cladosporin derivative 1
6KA6: “Crystal structure of plasmodium lysyl-tRNA synthetase in complex with a cladosporin derivative 1”. X-ray diffraction, 1 ligand (D4O). MolNFT v1 #154409 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KA6
- Type
- protein
- Length
- 1,982 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W7JP72
- Ligands
- D4O
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 488 | — | W7JP72 |
| B | — | protein | 505 | — | W7JP72 |
| C | — | protein | 487 | — | W7JP72 |
| D | — | protein | 502 | — | W7JP72 |
Ligands and binding sites
- D4O · (3~{S})-3-[[(1~{S},3~{S})-3-methylcyclohexyl]methyl]-6, 8-bis(oxidanyl)-3,4-dihydroisochromen-1-one · ligand · 4 copies · chains A, B, C, D
- GOL · Glycerol · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KA6 · Crystal structure of plasmodium lysyl-tRNA synthetase in complex with a cladosporin… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W7JP72
- Elsewhere: RCSB PDB 6KA6 · PDBe 6KA6 · UniProt W7JP72
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