MolNFT v1 · #154403 · protein

Silver-bound E.COLI malate dehydrogenase

6KA0: “Silver-bound E.COLI malate dehydrogenase”. X-ray diffraction, 1 ligand (AG). MolNFT v1 #154403 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KA0
Type: protein
Length: 1,211 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P61889
Ligands: AG

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	311	—	P61889
B, C, D	—	protein	300	—	P61889

Ligands and binding sites

AG · Silver ion · metal · 5 copies · chains A, B, C, D
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6KA0 · Silver-bound E.coli Malate dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
P61889 · AlphaFold monomer V2.0 prediction for malate dehydrogenase (P61889) · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61889
Elsewhere: RCSB PDB 6KA0 · PDBe 6KA0 · UniProt P61889

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