MolNFT v1 · #154312 · protein

Crystal structure of mbpapo-TIM21 fusion protein with a 16-residue helical linker

6K7D · MALTOSE/MALTODEXTRIN-binding periplasmic protein…: “Crystal structure of mbpapo-TIM21 fusion protein with a 16-residue helical linker”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #154312 on GenesisL1: 3D…

PDB: 6K7D
Type: protein
Length: 499 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MALTOSE/MALTODEXTRIN-binding periplasmic protein, mitochondrial import inner membrane…
UniProt: P0AEX9, P53220
Pockets: 3 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MALTOSE/MALTODEXTRIN-binding periplasmic protein, mitochondrial import inner membrane translocase subunit TIM21	protein	499	40% helix, 23% strand	P0AEX9, P53220

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	705	0.66	0.75	83	empty
2	97	0.36	0.74	14	empty
3	58	0.29	0.74	15	empty

Compared structures

6K7D · Crystal structure of MBPapo-Tim21 fusion protein with a 16-residue helical linker · the same entry in another collection · chain A against A, TM-score 1.00
P53220 · AlphaFold monomer V2.0 prediction for mitochondrial import inner membrane translocase… · a predicted model of the same protein · chain A against A, TM-score 0.26

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AEX9
Every structure of UniProt P53220
Elsewhere: RCSB PDB 6K7D · PDBe 6K7D · UniProt P0AEX9 · UniProt P53220

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