MolNFT v1 · #154271 · protein
Crystal structure of lysozyme complexed with a bioactive compound from jatropha gossypiifolia
6K5Q: “Crystal structure of lysozyme complexed with a bioactive compound from jatropha gossypiifolia”. X-ray diffraction, 2 ligands (D2L, NA). MolNFT v1 #154271 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K5Q
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00698
- Ligands
- D2L, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | P00698 |
Ligands and binding sites
- D2L · [(3R,6R)-6-methyloctan-3-yl] 2-[(2S,4S,6R)-2-[(2S)-2-ethylpentyl]-6-methyl-1-(2-oxidanylideneethyl) piperidin-4-yl]ethanesulfonate · ligand · chains A
- NA · Sodium ion · metal · chains A
- ACT · Acetate ion · additive · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K5Q · Crystal structure of lysozyme complexed with a bioactive compound from Jatropha… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 6K5Q · PDBe 6K5Q · UniProt P00698
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