MolNFT v1 · #154114 · protein

The crystal structure of simian CD163 SRCR5

6K0L · Scavenger receptor cysteine-rich type 1 protein M130: “The crystal structure of simian CD163 SRCR5”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #154114 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6K0L
Type: protein
Length: 213 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Scavenger receptor cysteine-rich type 1 protein M130
UniProt: Q2VLG4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 16% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Scavenger receptor cysteine-rich type 1 protein M130	protein	106	18% helix, 34% strand	Q2VLG4
B	Scavenger receptor cysteine-rich type 1 protein M130	protein	107	15% helix, 33% strand	Q2VLG4

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.36	0.75	24	empty

Interfaces

1 interface between chains.

A–B · 348 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

6K0L · The crystal structure of simian CD163 SRCR5 · the same entry in another collection · chain A against A, TM-score 1.00
Q2VLG4 · AlphaFold monomer V2.0 prediction for scavenger receptor cysteine- rich type 1 protein… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2VLG4
Elsewhere: RCSB PDB 6K0L · PDBe 6K0L · UniProt Q2VLG4

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