MolNFT v1 · #154031 · protein
Structure of CSOS4B from halothiobacillus neapolitanus
6JY5 · Unidentified carboxysome polypeptide: “Structure of CSOS4B from halothiobacillus neapolitanus”. X-ray diffraction, 1 pocket (best druggability 0.66). MolNFT v1 #154031 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JY5
- Type
- protein
- Length
- 386 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unidentified carboxysome polypeptide
- UniProt
- O85044
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 4 distinct chains · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, B | Unidentified carboxysome polypeptide | protein | 82 | 11% helix, 43% strand | O85044 |
| A | Unidentified carboxysome polypeptide | protein | 73 | 11% helix, 42% strand | O85044 |
| C | Unidentified carboxysome polypeptide | protein | 78 | 12% helix, 41% strand | O85044 |
| E | Unidentified carboxysome polypeptide | protein | 71 | 0% helix, 48% strand | O85044 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 810 | 0.66 | 0.74 | 92 | empty |
Interfaces
6 interfaces between chains.
- B–E · 1262 Ų buried · 29 hydrogen bonds · protein-protein
- D–B · 1113 Ų buried · 23 hydrogen bonds · protein-protein
- D–A · 810 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 809 Ų buried · 13 hydrogen bonds · protein-protein
- C–E · 774 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6JY5 · Structure of CsoS4B from Halothiobacillus neapolitanus · the same entry in another collection · chain E against E, TM-score 1.00
- O85044 · AlphaFold monomer V2.0 prediction for carboxysome shell vertex protein CSOS4B (O85044) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O85044
- Elsewhere: RCSB PDB 6JY5 · PDBe 6JY5 · UniProt O85044
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