MolNFT v1 · #154010 · protein

Crystasl structure of beta-glucosidase D2-bgl from chaetomella raphigera

6JXG: “Crystasl structure of beta-glucosidase D2-bgl from chaetomella raphigera”. X-ray diffraction, 2 ligands (NAG, MAN), 4 pockets (best druggability 0.50). MolNFT v1 #154010 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JXG
Type: protein
Length: 713 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase
EC: 3.2.1.21
UniProt: A0A068FT77
Ligands: NAG, MAN
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucosidase (EC 3.2.1.21)	protein	713	28% helix, 22% strand	A0A068FT77

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
MAN · alpha-D-mannopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.50	0.83	20	empty
2	145	0.42	0.74	23	empty
3	83	0.42	0.79	25	empty
4	74	0.34	0.76	21	empty

Modifications

Observed in the structure: 4 glycan, 3 disulfide (disulfide, N-glycosylation, O-glycosylation).

Compared structures

6JXG · Crystasl Structure of Beta-glucosidase D2-BGL from Chaetomella Raphigera · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A068FT77
Elsewhere: RCSB PDB 6JXG · PDBe 6JXG · UniProt A0A068FT77

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