MolNFT v1 · #153975 · DNA
Structure of ret G-quadruplex in complex with berberine
6JWD · DNA (5'- D(*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*…: “Structure of ret G-quadruplex in complex with berberine”. Solution nmr, 1 ligand (BER). MolNFT v1 #153975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JWD
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3')
- Ligands
- BER
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3') | dna | 20 | — | — |
Ligands and binding sites
- BER · Berberine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JWD · structure of RET G-quadruplex in complex with berberine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6JWD · PDBe 6JWD
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