MolNFT v1 · #153941 · protein

Crystal structure of human apo MTH1

6JVF · 7,8-dihydro-8-oxoguanine triphosphatase: “Crystal structure of human apo MTH1”. X-ray diffraction, 3 pockets (best druggability 0.69). MolNFT v1 #153941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JVF
Type: protein
Length: 305 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 7,8-dihydro-8-oxoguanine triphosphatase
EC: 3.6.1.55, 3.6.1.56
UniProt: P36639
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	7,8-dihydro-8-oxoguanine triphosphatase (EC 3.6.1.55, 3.6.1.56)	protein	154	16% helix, 47% strand	P36639
B	7,8-dihydro-8-oxoguanine triphosphatase (EC 3.6.1.55, 3.6.1.56)	protein	151	19% helix, 44% strand	P36639

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	167	0.69	0.88	28	empty
2	167	0.67	0.87	29	empty
3	71	0.33	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 449 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

6JVF · Crystal structure of human apo MTH1 · the same entry in another collection · chain A against A, TM-score 1.00
P36639 · AlphaFold monomer V2.0 prediction for 7,8-dihydro-8-oxoguanine triphosphatase (P36639) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36639
Elsewhere: RCSB PDB 6JVF · PDBe 6JVF · UniProt P36639

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