MolNFT v1 · #153936 · protein

Chimeric rat C5A

6JV7 · Chimeric-RC5A: “Chimeric rat C5A”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #153936 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JV7
Type: protein
Length: 154 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chimeric-RC5A; D-anaphylatoxin C5A
UniProt: P08650
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 63% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chimeric-RC5A	protein	77	64% helix, 0% strand	P08650
B	D-anaphylatoxin C5A	protein	77	62% helix, 0% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 529 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 73 d-amino, 6 disulfide, 3 modified (D-amino acid, disulfide, nonstandard).

Compared structures

6JV7 · Chimeric Rat C5a · the same entry in another collection · chain A against A, TM-score 1.00
P08650 · AlphaFold monomer V2.0 prediction for complement C5 (P08650) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08650
Elsewhere: RCSB PDB 6JV7 · PDBe 6JV7 · UniProt P08650

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