MolNFT v1 · #153928 · protein
Crystal structure of argz, apo structure, an arginine dihydrolase from the ornithine-ammonia cycle in cyanobacteria
6JUY · SLL1336 protein: “Crystal structure of argz, apo structure, an arginine dihydrolase from the ornithine-ammonia cycle in…”. X-ray diffraction, 20 pockets (best druggability 0.80). MolNFT v1 #153928 on GenesisL1: 3D structure, binding…
- PDB
- 6JUY
- Type
- protein
- Length
- 2,555 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SLL1336 protein
- UniProt
- P74535
- Pockets
- 20 · best druggability 0.80
Structure
x-ray diffraction · 4 distinct chains · 34% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SLL1336 protein | protein | 639 | 34% helix, 25% strand | P74535 |
| B | SLL1336 protein | protein | 637 | 35% helix, 24% strand | P74535 |
| C | SLL1336 protein | protein | 656 | 35% helix, 23% strand | P74535 |
| D | SLL1336 protein | protein | 623 | 34% helix, 23% strand | P74535 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1003 | 0.80 | 0.81 | 93 | empty |
| 2 | 180 | 0.76 | 0.92 | 44 | empty |
| 3 | 949 | 0.76 | 0.79 | 88 | empty |
| 4 | 73 | 0.74 | 0.98 | 23 | empty |
| 5 | 687 | 0.73 | 0.80 | 73 | empty |
Interfaces
6 interfaces between chains.
- A–B · 2332 Ų buried · 32 hydrogen bonds · protein-protein
- C–D · 2110 Ų buried · 24 hydrogen bonds · protein-protein
- A–D · 1201 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 1079 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 313 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6JUY · Crystal Structure of ArgZ, apo structure, an Arginine Dihydrolase from the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74535
- Elsewhere: RCSB PDB 6JUY · PDBe 6JUY · UniProt P74535
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