MolNFT v1 · #153908 · protein

The complex of PDZ and pbm

6JUE · Partitioning defective 3 homolog: “The complex of PDZ and pbm”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #153908 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JUE
Type: protein
Length: 101 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Partitioning defective 3 homolog; Thr-ile-ile-thr-leu
UniProt: Q9Z340
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	Partitioning defective 3 homolog	protein	96	18% helix, 43% strand	Q9Z340
A	Thr-ile-ile-thr-leu	protein	5	0% helix, 60% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

L–A · 401 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

6JUE · The complex of PDZ and PBM · the same entry in another collection · chain L against L, TM-score 1.00
Q9Z340 · AlphaFold monomer V2.0 prediction for partitioning defective 3 homolog (Q9Z340) · a predicted model of the same protein · chain L against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Z340
Elsewhere: RCSB PDB 6JUE · PDBe 6JUE · UniProt Q9Z340

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