MolNFT v1 · #153767 · protein
An X-ray structure of met sperm whale F43Y/T67R myoglobin with tyr- heme double cross-links
6JP1: “An X-ray structure of met sperm whale F43Y/T67R myoglobin with tyr- heme double cross-links”. X-ray diffraction, 1 ligand (HEM), 2 pockets (best druggability 0.70). MolNFT v1 #153767 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6JP1
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- HEM
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Myoglobin | protein | 151 | 78% helix, 0% strand | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.70 | 0.85 | 31 | HEM |
| 2 | 243 | 0.66 | 0.83 | 30 | HEM |
Modifications
Observed in the structure: 2 cofactor (heme attachment).
Compared structures
- 6JP1 · An X-ray structure of met sperm whale F43Y/T67R myoglobin with Tyr-heme double cross-links · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 6JP1 · PDBe 6JP1 · UniProt P02185
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