MolNFT v1 · #153764 · protein
Triosephosphate isomerase-scylla paramamosain
6JOX: “Triosephosphate isomerase-scylla paramamosain”. X-ray diffraction, 3 pockets (best druggability 0.42). MolNFT v1 #153764 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JOX
- Type
- protein
- Length
- 490 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Triosephosphate isomerase
- EC
- 5.3.1.1
- UniProt
- A0A1L5YRA2
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | Triosephosphate isomerase (EC 5.3.1.1) | protein | 245 | 45% helix, 16% strand | A0A1L5YRA2 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.42 | 0.76 | 29 | empty |
| 2 | 51 | 0.36 | 0.80 | 22 | empty |
| 3 | 69 | 0.35 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- B–A · 1648 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 6JOX · triosephosphate isomerase-scylla paramamosain · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L5YRA2
- Elsewhere: RCSB PDB 6JOX · PDBe 6JOX · UniProt A0A1L5YRA2
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