MolNFT v1 · #153669 · protein

Crystal structure of CTLD7 domain of human PLA2R

6JLI · Secretory phospholipase A2 receptor: “Crystal structure of CTLD7 domain of human PLA2R”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #153669 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JLI
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secretory phospholipase A2 receptor
UniProt: Q13018
Ligands: NAG

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secretory phospholipase A2 receptor	protein	118	23% helix, 34% strand	Q13018

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

6JLI · Crystal structure of CTLD7 domain of human PLA2R · the same entry in another collection · chain A against A, TM-score 1.00
Q13018 · AlphaFold monomer V2.0 prediction for secretory phospholipase A2 receptor (Q13018) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13018
Elsewhere: RCSB PDB 6JLI · PDBe 6JLI · UniProt Q13018

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