MolNFT v1 · #153659 · protein
Crystal structure of gmp reductase C318A from trypanosoma brucei
6JL8: “Crystal structure of gmp reductase C318A from trypanosoma brucei”. X-ray diffraction, 7 pockets (best druggability 0.65). MolNFT v1 #153659 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JL8
- Type
- protein
- Length
- 895 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gmp reductase
- EC
- 1.7.1.7
- UniProt
- Q57ZS7
- Pockets
- 7 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gmp reductase (EC 1.7.1.7) | protein | 453 | 34% helix, 22% strand | Q57ZS7 |
| B | Gmp reductase (EC 1.7.1.7) | protein | 442 | 35% helix, 21% strand | Q57ZS7 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 289 | 0.65 | 0.81 | 34 | empty |
| 2 | 245 | 0.55 | 0.78 | 30 | empty |
| 3 | 64 | 0.36 | 0.78 | 20 | empty |
| 4 | 69 | 0.30 | 0.74 | 19 | empty |
| 5 | 68 | 0.27 | 0.72 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 18 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6JL8 · Crystal structure of GMP reductase C318A from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57ZS7
- Elsewhere: RCSB PDB 6JL8 · PDBe 6JL8 · UniProt Q57ZS7
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