MolNFT v1 · #153652 · protein
Crystal structure of vvplpa G389D from vibrio vulnificus
6JL1 · Thermolabile hemolysin: “Crystal structure of vvplpa G389D from vibrio vulnificus”. X-ray diffraction, 2 pockets (best druggability 0.80). MolNFT v1 #153652 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JL1
- Type
- protein
- Length
- 397 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermolabile hemolysin
- UniProt
- A0A2S3SYP4
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermolabile hemolysin | protein | 397 | 39% helix, 18% strand | A0A2S3SYP4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 781 | 0.80 | 0.83 | 84 | empty |
| 2 | 76 | 0.47 | 0.82 | 24 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6JL1 · Crystal structure of VvPlpA G389D from Vibrio vulnificus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S3SYP4
- Elsewhere: RCSB PDB 6JL1 · PDBe 6JL1 · UniProt A0A2S3SYP4
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