MolNFT v1 · #153651 · protein

Crystal structure of vvplpa from vibrio vulnificus

6JL0 · Thermolabile hemolysin: “Crystal structure of vvplpa from vibrio vulnificus”. X-ray diffraction, 1 ligand (BR), 1 pocket (best druggability 0.81). MolNFT v1 #153651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JL0
Type: protein
Length: 396 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thermolabile hemolysin
UniProt: A0A2S3SYP4
Ligands: BR
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thermolabile hemolysin	protein	396	39% helix, 18% strand	A0A2S3SYP4

Ligands and binding sites

BR · Bromide ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	668	0.81	0.85	75	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6JL0 · Crystal structure of VvPlpA from Vibrio vulnificus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2S3SYP4
Elsewhere: RCSB PDB 6JL0 · PDBe 6JL0 · UniProt A0A2S3SYP4

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