MolNFT v1 · #153628 · protein

Crystal structure of tetrameric PEPTSO2 in I4 space group

6JKD · PROTON:OLIGOPEPTIDE symporter pot family: “Crystal structure of tetrameric PEPTSO2 in I4 space group”. X-ray diffraction, 4 pockets (best druggability 0.78). MolNFT v1 #153628 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6JKD
Type: protein
Length: 459 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PROTON:OLIGOPEPTIDE symporter pot family
UniProt: Q8EHE6
Pockets: 4 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 80% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PROTON:OLIGOPEPTIDE symporter pot family	protein	459	80% helix, 2% strand	Q8EHE6

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1072	0.78	0.80	57	empty
2	269	0.60	0.78	37	empty
3	104	0.39	0.76	25	empty
4	91	0.38	0.76	17	empty

Compared structures

6JKD · Crystal structure of tetrameric PepTSo2 in I4 space group · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EHE6
Elsewhere: RCSB PDB 6JKD · PDBe 6JKD · UniProt Q8EHE6

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