MolNFT v1 · #153618 · protein

Crystal structure of a mini fungal lectin, phosl in complex with core- fucosylated chitobiose

6JK3: “Crystal structure of a mini fungal lectin, phosl in complex with core- fucosylated chitobiose”. X-ray diffraction, 2 ligands (NAG, FUC). MolNFT v1 #153618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JK3
Type: protein
Length: 120 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
UniProt: A0A3B6UEU4
Ligands: NAG, FUC

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 65% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Lectin	protein	40	0% helix, 65% strand	A0A3B6UEU4

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains B, A, C
FUC · alpha-L-fucopyranose · sugar · 3 copies · chains A, B, C
GOL · Glycerol · additive · 4 copies · chains A, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

A–B · 705 Å² buried · 17 hydrogen bonds · protein-protein
B–C · 704 Å² buried · 21 hydrogen bonds · protein-protein
A–C · 698 Å² buried · 22 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

6JK3 · Crystal structure of a mini fungal lectin, PhoSL in complex with core-fucosylated… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A3B6UEU4
Elsewhere: RCSB PDB 6JK3 · PDBe 6JK3 · UniProt A0A3B6UEU4

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