MolNFT v1 · #153553 · protein

Tetrameric PEPTSO2 incorporated in salipro nano particle

6JI1 · PROTON:OLIGOPEPTIDE symporter pot family: “Tetrameric PEPTSO2 incorporated in salipro nano particle”. Electron microscopy, 20 pockets (best druggability 0.81). MolNFT v1 #153553 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6JI1
Type: protein
Length: 1,848 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PROTON:OLIGOPEPTIDE symporter pot family
UniProt: Q8EHE6
Pockets: 20 · best druggability 0.81

Structure

electron microscopy · 1 distinct chain · 63% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	PROTON:OLIGOPEPTIDE symporter pot family	protein	462	63% helix, 0% strand	Q8EHE6

Pockets

20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	967	0.81	0.82	75	empty
2	1060	0.80	0.81	99	empty
3	950	0.80	0.82	81	empty
4	887	0.80	0.82	60	empty
5	631	0.69	0.76	56	empty

Interfaces

4 interfaces between chains.

A–B · 773 Å² buried · 5 hydrogen bonds · protein-protein
C–D · 772 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 771 Å² buried · 5 hydrogen bonds · protein-protein
B–D · 768 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6JI1 · Tetrameric PepTSo2 incorporated in salipro nano particle · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EHE6
Elsewhere: RCSB PDB 6JI1 · PDBe 6JI1 · UniProt Q8EHE6

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