MolNFT v1 · #153515 · protein
Crystal structure of barley exohydrolasei W434Y in complex with 4'- nitrophenyl thiolaminaribioside
6JGR · Beta-D-glucan glucohydrolase isoenzyme EXO1: “Crystal structure of barley exohydrolasei W434Y in complex with 4'- nitrophenyl thiolaminaribioside”. X-ray diffraction, 1 ligand (LAM), 2 pockets (best druggability 0.52). MolNFT v1…
- PDB
- 6JGR
- Type
- protein
- Length
- 603 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-D-glucan glucohydrolase isoenzyme EXO1
- UniProt
- A0A287SCR5
- Ligands
- LAM
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-D-glucan glucohydrolase isoenzyme EXO1 | protein | 603 | 36% helix, 12% strand | A0A287SCR5 |
Ligands and binding sites
- LAM · 4'-nitrophenyl-S-(beta-D-glucopyranosyl)-(1-3)-(3-thio-beta-D-glucopyranosyl)-(1-3)-beta-D-glucopyranoside · ligand · chains A
- ACT · Acetate ion · additive · 13 copies · chains A
- 1PE · Pentaethylene glycol · additive · 8 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.52 | 0.80 | 21 | LAM |
| 2 | 52 | 0.24 | 0.72 | 20 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6JGR · Crystal structure of barley exohydrolaseI W434Y in complex with 4'-nitrophenyl… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A287SCR5
- Elsewhere: RCSB PDB 6JGR · PDBe 6JGR · UniProt A0A287SCR5
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