MolNFT v1 · #153503 · protein

Crystal structure of se-met cadr from P. putida with a 21 residue C- terminal truncation

6JGF: “Crystal structure of se-met cadr from P. putida with a 21 residue C- terminal truncation”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.28). MolNFT v1 #153503 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6JGF
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cadr
UniProt: Q93TP7
Ligands: PO4
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cadr	protein	117	76% helix, 0% strand	Q93TP7

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.28	0.72	13	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

6JGF · Crystal structure of Se-Met CadR from P. putida with a 21 residue C-terminal truncation · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93TP7
Elsewhere: RCSB PDB 6JGF · PDBe 6JGF · UniProt Q93TP7

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