MolNFT v1 · #153433 · protein

Crystal structure of a beta-N-acetylhexosaminidase

6JEA: “Crystal structure of a beta-N-acetylhexosaminidase”. X-ray diffraction, 2 ligands (NAG, ZN), 3 pockets (best druggability 0.54). MolNFT v1 #153433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JEA
Type: protein
Length: 469 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-N-acetylhexosaminidase
EC: 3.2.1.52
UniProt: B2UP57
Ligands: NAG, ZN
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-N-acetylhexosaminidase (EC 3.2.1.52)	protein	469	36% helix, 19% strand	B2UP57

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.54	0.77	30	NAG
2	56	0.38	0.80	16	empty
3	67	0.36	0.77	14	empty

Compared structures

6JEA · crystal structure of a beta-N-acetylhexosaminidase · the same entry in another collection · chain A against A, TM-score 1.00
B2UP57 · AlphaFold monomer V2.0 prediction for beta-hexosaminidase AMUC_2018 (B2UP57) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2UP57
Elsewhere: RCSB PDB 6JEA · PDBe 6JEA · UniProt B2UP57

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.