MolNFT v1 · #153414 · protein
The IMM52 family protein tsit (PA3908) from pseudomonas aeruginosa
6JDP: “The IMM52 family protein tsit (PA3908) from pseudomonas aeruginosa”. X-ray diffraction, 2 ligands (NA, PO4), 2 pockets (best druggability 0.51). MolNFT v1 #153414 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JDP
- Type
- protein
- Length
- 241 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IMM52 family protein
- UniProt
- Q9HXA5
- Ligands
- NA, PO4
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | IMM52 family protein | protein | 241 | 39% helix, 23% strand | Q9HXA5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.51 | 0.85 | 19 | empty |
| 2 | 67 | 0.32 | 0.75 | 16 | empty |
Compared structures
- 6JDP · the imm52 family protein TsiT (PA3908) from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXA5
- Elsewhere: RCSB PDB 6JDP · PDBe 6JDP · UniProt Q9HXA5
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