MolNFT v1 · #153386 · protein

AAV5 in neutral condition at 3.18 ang

6JCT · Capsid protein: “AAV5 in neutral condition at 3.18 ang”. Electron microscopy, 7 pockets (best druggability 0.67). MolNFT v1 #153386 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6JCT
Type: protein
Length: 516 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein
UniProt: Q9YIJ1
Pockets: 7 · best druggability 0.67

Structure

electron microscopy · 1 distinct chain · 5% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein	protein	516	5% helix, 33% strand	Q9YIJ1

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	350	0.67	0.81	41	empty
2	353	0.56	0.75	47	empty
3	219	0.47	0.74	28	empty
4	136	0.43	0.75	26	empty
5	190	0.42	0.72	26	empty

Compared structures

6JCT · AAV5 in neutral condition at 3.18 Ang · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YIJ1
Elsewhere: RCSB PDB 6JCT · PDBe 6JCT · UniProt Q9YIJ1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.