MolNFT v1 · #153375 · protein

Crystal structure of spae basal pilin from lactobacillus rhamnosus gg - orthorhombic form

6JCH · Pilus assembly protein: “Crystal structure of spae basal pilin from lactobacillus rhamnosus gg - orthorhombic form”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.41). MolNFT v1 #153375 on GenesisL1: 3D structure…

PDB: 6JCH
Type: protein
Length: 327 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pilus assembly protein
UniProt: A0A345U425
Ligands: NA
Pockets: 3 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pilus assembly protein	protein	327	10% helix, 40% strand	A0A345U425

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.41	0.81	18	empty
2	88	0.40	0.78	22	empty
3	81	0.37	0.77	18	empty

Modifications

Observed in the structure: 2 isopeptide (isopeptide).

Compared structures

6JCH · Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Orthorhombic form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A345U425
Elsewhere: RCSB PDB 6JCH · PDBe 6JCH · UniProt A0A345U425

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