GL1X · GenesisL1 explorer

MolNFT v1 · #153286 · protein

Crystal structure of SESTD2 in complex with H3.3S31PHK36M peptide

6J9J: “Crystal structure of SESTD2 in complex with H3.3S31PHK36M peptide”. X-ray diffraction, 2 ligands (ZN, SCN). MolNFT v1 #153286 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6J9J
Type
protein
Length
262 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9BYW2
Ligands
ZN, SCN

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein248—Q9BYW2
B—protein14——

Ligands and binding sites

  • ZN · Zinc ion · metal · 3 copies · chains A
  • SCN · Thiocyanate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6J9J · crystal structure of SESTD2 in complex with H3.3S31phK36M peptide · the same entry in another collection · chain B against B, TM-score 1.00
  • Q9BYW2 · AlphaFold monomer V2.0 prediction for histone-lysine N-methyltransferase SETD2 (Q9BYW2) · a predicted model of the same protein · chain A against A, TM-score 0.99

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