MolNFT v1 · #153166 · protein
Cryo-EM structure of the mammalian E-state ATP synthase
6J5J: “Cryo-EM structure of the mammalian E-state ATP synthase”. Electron microscopy, 3 ligands (ATP, ADP, MG). MolNFT v1 #153166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6J5J
- Type
- protein
- Length
- 5,214 residues
- Chains
- 30
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P80021, K7GLT8, Q29307, A0A287A9I8, A0A286ZYL7, A5GFX4, Q2EN81, A0A286ZYM6, P13618, A0A287B4I0, Q95339, F1RFD4, Q35914, Q35915, Q4VT52
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 23 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 504 | — | P80021 |
| B | — | protein | 501 | — | P80021 |
| C | — | protein | 488 | — | P80021 |
| D | — | protein | 469 | — | K7GLT8 |
| E | — | protein | 465 | — | K7GLT8 |
| F | — | protein | 466 | — | K7GLT8 |
| J | — | protein | 55 | — | Q29307 |
| G | — | protein | 272 | — | A0A287A9I8 |
| H | — | protein | 132 | — | A0A286ZYL7 |
| I | — | protein | 48 | — | A5GFX4 |
| S | — | protein | 187 | — | Q2EN81 |
| b | — | protein | 209 | — | A0A286ZYM6 |
| c | — | protein | 70 | — | P13618 |
| d | — | protein | 147 | — | A0A287B4I0 |
| e | — | protein | 63 | — | — |
| f | — | protein | 87 | — | Q95339 |
| g | — | protein | 84 | — | — |
| i | — | protein | 41 | — | F1RFD4 |
| k | — | protein | 29 | — | — |
| 8 | — | protein | 56 | — | Q35914 |
| a | — | protein | 223 | — | Q35915 |
| K, L, M, N, O, P, Q, R | — | protein | 72 | — | Q4VT52 |
| u | — | protein | 42 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains A, D, B, E, C, F
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains D, B, F
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6J5J · Cryo-EM structure of the mammalian E-state ATP synthase · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80021
- Every structure of UniProt K7GLT8
- Every structure of UniProt Q29307
- Every structure of UniProt A0A287A9I8
- Every structure of UniProt A0A286ZYL7
- Every structure of UniProt A5GFX4
- Every structure of UniProt Q2EN81
- Every structure of UniProt A0A286ZYM6
- Every structure of UniProt P13618
- Every structure of UniProt A0A287B4I0
- Every structure of UniProt Q95339
- Every structure of UniProt F1RFD4
- Every structure of UniProt Q35914
- Every structure of UniProt Q35915
- Every structure of UniProt Q4VT52
- Elsewhere: RCSB PDB 6J5J · PDBe 6J5J · UniProt P80021 · UniProt K7GLT8 · UniProt Q29307 · UniProt A0A287A9I8 · UniProt A0A286ZYL7 · UniProt A5GFX4 · UniProt Q2EN81 · UniProt A0A286ZYM6 · UniProt P13618 · UniProt A0A287B4I0 · UniProt Q95339 · UniProt F1RFD4 · UniProt Q35914 · UniProt Q35915 · UniProt Q4VT52
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