MolNFT v1 · #153134 · protein
Structural basis for the target DNA recognition and binding by the myb domain of phosphate starvation response 1
6J4K · Protein phosphate starvation response 1: “Structural basis for the target DNA recognition and binding by the myb domain of phosphate starvation…”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #153134 on GenesisL1…
- PDB
- 6J4K
- Type
- protein
- Length
- 118 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein phosphate starvation response 1
- UniProt
- Q94CL7
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein phosphate starvation response 1 | protein | 60 | 57% helix, 0% strand | Q94CL7 |
| B | Protein phosphate starvation response 1 | protein | 58 | 60% helix, 0% strand | Q94CL7 |
Ligands and binding sites
- GOL · Glycerol · additive · 5 copies · chains A, B
- MLA · Malonic acid · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.34 | 0.78 | 14 | GOL |
Interfaces
1 interface between chains.
- A–B · 395 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6J4K · Structural basis for the target DNA recognition and binding by the MYB domain of… · the same entry in another collection · chain A against A, TM-score 1.00
- Q94CL7 · AlphaFold monomer V2.0 prediction for protein phosphate starvation response 1 (Q94CL7) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q94CL7
- Elsewhere: RCSB PDB 6J4K · PDBe 6J4K · UniProt Q94CL7
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